STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PYTT_1974Hypothetical protein. (206 aa)    
Predicted Functional Partners:
PYTT_1973
Sigmaw regulon antibacterial.
       0.718
PYTT_1971
Hypothetical protein.
       0.487
queA
S-adenosylmethionine:trna ribosyltransferase-isomerase quea; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.487
tdh
Tdh: l-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
       0.420
Your Current Organism:
Akkermansia glycaniphila
NCBI taxonomy Id: 1679444
Other names: A. glycaniphila, Akkermansia glycaniphila Ouwerkerk et al. 2016, Akkermansia sp. Pyt, CIP 110913, DSM 100705, strain Pyt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.