Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ndx | NudF-2 | RY70_863 | RY70_858 | Putative nudix hydrolase. | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | 0.949 |
Ndx | pgm | RY70_863 | RY70_1659 | Putative nudix hydrolase. | Phosphoglucomutase. | 0.900 |
Ndx | prs | RY70_863 | RY70_1188 | Putative nudix hydrolase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.911 |
Ndx | prs_1_1 | RY70_863 | RY70_336 | Putative nudix hydrolase. | Ribose-phosphate pyrophosphokinase. | 0.900 |
NudF-2 | Ndx | RY70_858 | RY70_863 | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | Putative nudix hydrolase. | 0.949 |
NudF-2 | pgm | RY70_858 | RY70_1659 | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | Phosphoglucomutase. | 0.904 |
NudF-2 | prs | RY70_858 | RY70_1188 | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.908 |
NudF-2 | prs_1_1 | RY70_858 | RY70_336 | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | Ribose-phosphate pyrophosphokinase. | 0.908 |
glmU | prs | RY70_1186 | RY70_1188 | Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.911 |
glmU | prs_1_1 | RY70_1186 | RY70_336 | Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | Ribose-phosphate pyrophosphokinase. | 0.830 |
hisG | prs | RY70_1044 | RY70_1188 | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.830 |
hisG | prs_1_1 | RY70_1044 | RY70_336 | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Long subfamily. | Ribose-phosphate pyrophosphokinase. | 0.830 |
pgm | Ndx | RY70_1659 | RY70_863 | Phosphoglucomutase. | Putative nudix hydrolase. | 0.900 |
pgm | NudF-2 | RY70_1659 | RY70_858 | Phosphoglucomutase. | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | 0.904 |
pgm | prs | RY70_1659 | RY70_1188 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.905 |
pgm | prs_1_1 | RY70_1659 | RY70_336 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase. | 0.905 |
pgm | rpiA | RY70_1659 | RY70_1663 | Phosphoglucomutase. | Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.961 |
pgm | tkt | RY70_1659 | RY70_1079 | Phosphoglucomutase. | Transketolase; Belongs to the transketolase family. | 0.952 |
prs | Ndx | RY70_1188 | RY70_863 | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | Putative nudix hydrolase. | 0.911 |
prs | NudF-2 | RY70_1188 | RY70_858 | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | NTP pyrophosphohydrolase including oxidative damage repair enzymes. | 0.908 |
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