node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RplO | RpmD | RY70_1686 | RY70_1687 | 50S ribosomal protein L15. | 50S ribosomal protein L30. | 0.999 |
RplO | infA | RY70_1686 | RY70_1683 | 50S ribosomal protein L15. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.998 |
RplO | rplE | RY70_1686 | RY70_1693 | 50S ribosomal protein L15. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
RplO | rplF | RY70_1686 | RY70_1690 | 50S ribosomal protein L15. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
RplO | rplR | RY70_1686 | RY70_1689 | 50S ribosomal protein L15. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
RplO | rpmC | RY70_1686 | RY70_1697 | 50S ribosomal protein L15. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
RplO | rpsE | RY70_1686 | RY70_1688 | 50S ribosomal protein L15. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
RplO | rpsG | RY70_1686 | RY70_1427 | 50S ribosomal protein L15. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
RplO | rpsH | RY70_1686 | RY70_1691 | 50S ribosomal protein L15. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
RplO | rpsM | RY70_1686 | RY70_1681 | 50S ribosomal protein L15. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
RpmD | RplO | RY70_1687 | RY70_1686 | 50S ribosomal protein L30. | 50S ribosomal protein L15. | 0.999 |
RpmD | infA | RY70_1687 | RY70_1683 | 50S ribosomal protein L30. | Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.999 |
RpmD | rplE | RY70_1687 | RY70_1693 | 50S ribosomal protein L30. | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
RpmD | rplF | RY70_1687 | RY70_1690 | 50S ribosomal protein L30. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
RpmD | rplR | RY70_1687 | RY70_1689 | 50S ribosomal protein L30. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
RpmD | rpmC | RY70_1687 | RY70_1697 | 50S ribosomal protein L30. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
RpmD | rpsE | RY70_1687 | RY70_1688 | 50S ribosomal protein L30. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
RpmD | rpsG | RY70_1687 | RY70_1427 | 50S ribosomal protein L30. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
RpmD | rpsH | RY70_1687 | RY70_1691 | 50S ribosomal protein L30. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
RpmD | rpsM | RY70_1687 | RY70_1681 | 50S ribosomal protein L30. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |