Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CapA | MalQ | RY70_1719 | RY70_1716 | PGA biosynthesis protein. | 4-alpha-glucanotransferase. | 0.647 |
CapA | RY70_1717 | RY70_1719 | RY70_1717 | PGA biosynthesis protein. | Hypothetical protein. | 0.588 |
CapA | RY70_1718 | RY70_1719 | RY70_1718 | PGA biosynthesis protein. | IMPACT family member YigZ. | 0.784 |
CapA | SerA | RY70_1719 | RY70_1484 | PGA biosynthesis protein. | D-3-phosphoglycerate dehydrogenase. | 0.414 |
MalQ | CapA | RY70_1716 | RY70_1719 | 4-alpha-glucanotransferase. | PGA biosynthesis protein. | 0.647 |
MalQ | RY70_1717 | RY70_1716 | RY70_1717 | 4-alpha-glucanotransferase. | Hypothetical protein. | 0.663 |
MalQ | RY70_1718 | RY70_1716 | RY70_1718 | 4-alpha-glucanotransferase. | IMPACT family member YigZ. | 0.567 |
MalQ | SerA | RY70_1716 | RY70_1484 | 4-alpha-glucanotransferase. | D-3-phosphoglycerate dehydrogenase. | 0.414 |
MalQ | rplM_2 | RY70_1716 | RY70_1714 | 4-alpha-glucanotransferase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.432 |
MalQ | rpsI_1 | RY70_1716 | RY70_1713 | 4-alpha-glucanotransferase. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.414 |
RY70_1717 | CapA | RY70_1717 | RY70_1719 | Hypothetical protein. | PGA biosynthesis protein. | 0.588 |
RY70_1717 | MalQ | RY70_1717 | RY70_1716 | Hypothetical protein. | 4-alpha-glucanotransferase. | 0.663 |
RY70_1717 | RY70_1718 | RY70_1717 | RY70_1718 | Hypothetical protein. | IMPACT family member YigZ. | 0.660 |
RY70_1717 | SerA | RY70_1717 | RY70_1484 | Hypothetical protein. | D-3-phosphoglycerate dehydrogenase. | 0.414 |
RY70_1717 | rplM_2 | RY70_1717 | RY70_1714 | Hypothetical protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.414 |
RY70_1717 | rpsI_1 | RY70_1717 | RY70_1713 | Hypothetical protein. | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.414 |
RY70_1718 | CapA | RY70_1718 | RY70_1719 | IMPACT family member YigZ. | PGA biosynthesis protein. | 0.784 |
RY70_1718 | MalQ | RY70_1718 | RY70_1716 | IMPACT family member YigZ. | 4-alpha-glucanotransferase. | 0.567 |
RY70_1718 | RY70_1717 | RY70_1718 | RY70_1717 | IMPACT family member YigZ. | Hypothetical protein. | 0.660 |
RY70_1718 | SerA | RY70_1718 | RY70_1484 | IMPACT family member YigZ. | D-3-phosphoglycerate dehydrogenase. | 0.414 |
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