Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY70_221ATP binding protein of ABC transporter. (234 aa)    
Predicted Functional Partners:
RY70_222
Putative transmembrane protein.
 
 
 0.935
OppF
ATPase component of various ABC-type transport systems.
 
   
0.913
YknZ
Putative permease protein of ABC transporter system.
 
 
 0.654
YbbL
Putative ABC transporter ATP-binding protein.
  
     0.651
YxbF
Transcriptional regulator.
   
   0.567
RY70_1880
Putative permease protein of ABC transportersystem.
 
   0.503
pheS
Phenylalanine-tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.431
RY70_1933
ABC-type antimicrobial peptide transport system protein.
  
 
 0.425
RY70_1550
SalY-type ABC antimicrobial peptide transportsystem permease component.
  
   0.423
RY70_1615
ATP-binding protein of ABC transporter system.
  
   0.423
Your Current Organism:
Bifidobacterium bifidum
NCBI taxonomy Id: 1681
Other names: AS 1.2212, ATCC 29521, Actinobacterium bifidum, Actinomyces bifidus, Actinomyces parabifidus, B. bifidum, BCRC 14615, Bacillus bifidus, Bacillus bifidus communis, Bacterium bifidum, Bacteroides bifidus, Bifidibacterium bifidum, CCRC 14615, CCRC:14615, CCUG 18364, CCUG 45217, CIP 56.7, Cohnistreptothrix bifidus, DSM 20456, IFO 14252, KCTC 3202, LMG 11041, LMG 8810, LMG:11041, LMG:8810, Lactobacillus bifidus type II, Lactobacillus parabifidus, NBRC 100015, NBRC 14252, NCFB 2715, NCIMB 702715, NCTC 13001, Nocardia bifida, Tissieria bifida, strain Ti
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