STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpCABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (375 aa)    
Predicted Functional Partners:
malF_2
ABC transporter permease.
 
 
 0.993
ycjP_13
L-arabinose transport system permease.
 
 0.967
AraQ
ABC-type sugar transport system protein.
 
 
 0.910
MdlB
ATP-binding cassette, subfamily B.
 
 
   
0.901
yheH_1
ABC-type multidrug transport system protein.
 
 
   
0.901
drrA_4
ATP-binding protein transporter system.
 
     
0.900
yheH_2
Putative ABC transporter ATP-binding protein.
 
 
   
0.880
AraN
Putative arabinose-binding protein.
 
 
 0.879
RY70_1857
ATP-binding cassette, subfamily B.
 
 
   
0.879
YurO
Putative ABC transporter extracellular-binding protein.
 
 
 0.871
Your Current Organism:
Bifidobacterium bifidum
NCBI taxonomy Id: 1681
Other names: AS 1.2212, ATCC 29521, Actinobacterium bifidum, Actinomyces bifidus, Actinomyces parabifidus, B. bifidum, BCRC 14615, Bacillus bifidus, Bacillus bifidus communis, Bacterium bifidum, Bacteroides bifidus, Bifidibacterium bifidum, CCRC 14615, CCRC:14615, CCUG 18364, CCUG 45217, CIP 56.7, Cohnistreptothrix bifidus, DSM 20456, IFO 14252, KCTC 3202, LMG 11041, LMG 8810, LMG:11041, LMG:8810, Lactobacillus bifidus type II, Lactobacillus parabifidus, NBRC 100015, NBRC 14252, NCFB 2715, NCIMB 702715, NCTC 13001, Nocardia bifida, Tissieria bifida, strain Ti
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