RY70_418 protein (Bifidobacterium bifidum) - STRING interaction network

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Score

RY70_418

Hypothetical protein. (214 aa)

Predicted Functional Partners:

rpmF

0.903

rpsC

0.799

RY70_417

0.782

rnc

0.770

rpsP

0.769

rplK

0.766

rpsF

0.764

rplM_2

0.758

rplU

0.757

rpsB

0.752

Your Current Organism:

Bifidobacterium bifidum

NCBI taxonomy Id: 1681
Other names: AS 1.2212, ATCC 29521, Actinobacterium bifidum, Actinomyces bifidus, Actinomyces parabifidus, B. bifidum, BCRC 14615, Bacillus bifidus, Bacillus bifidus communis, Bacterium bifidum, Bacteroides bifidus, Bifidibacterium bifidum, CCRC 14615, CCRC:14615, CCUG 18364, CCUG 45217, CIP 56.7, Cohnistreptothrix bifidus, DSM 20456, IFO 14252, KCTC 3202, LMG 11041, LMG 8810, LMG:11041, LMG:8810, Lactobacillus bifidus type II, Lactobacillus parabifidus, NBRC 100015, NBRC 14252, NCFB 2715, NCIMB 702715, NCTC 13001, Nocardia bifida, Tissieria bifida, strain Ti

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RY70_417	RY70_418	RY70_417	RY70_418	Cell division initiation protein.	Hypothetical protein.	0.782
RY70_417	rnc	RY70_417	RY70_420	Cell division initiation protein.	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.546
RY70_417	rpmF	RY70_417	RY70_419	Cell division initiation protein.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.638
RY70_418	RY70_417	RY70_418	RY70_417	Hypothetical protein.	Cell division initiation protein.	0.782
RY70_418	rnc	RY70_418	RY70_420	Hypothetical protein.	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.770
RY70_418	rplK	RY70_418	RY70_285	Hypothetical protein.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.766
RY70_418	rplM_2	RY70_418	RY70_1714	Hypothetical protein.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.758
RY70_418	rplU	RY70_418	RY70_320	Hypothetical protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.757
RY70_418	rpmF	RY70_418	RY70_419	Hypothetical protein.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.903
RY70_418	rpsB	RY70_418	RY70_1127	Hypothetical protein.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.752
RY70_418	rpsC	RY70_418	RY70_1699	Hypothetical protein.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.799
RY70_418	rpsF	RY70_418	RY70_340	Hypothetical protein.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.764
RY70_418	rpsP	RY70_418	RY70_405	Hypothetical protein.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.769
rnc	RY70_417	RY70_420	RY70_417	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Cell division initiation protein.	0.546
rnc	RY70_418	RY70_420	RY70_418	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Hypothetical protein.	0.770
rnc	rplK	RY70_420	RY70_285	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.771
rnc	rplM_2	RY70_420	RY70_1714	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.792
rnc	rplU	RY70_420	RY70_320	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.554
rnc	rpmF	RY70_420	RY70_419	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.915
rnc	rpsB	RY70_420	RY70_1127	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.822

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