STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RY70_459Putative TraG-like protein. (331 aa)    
Predicted Functional Partners:
KsgA
16S ribosomal RNA methyltransferase KsgA/Dim1 family protein.
  
  
 0.821
RY70_1765
Cell division initiation protein.
  
     0.758
RY70_1379
Putative DNA-binding protein.
  
     0.747
PyrE
PyrE Orotate phosphoribosyltransferase.
  
     0.737
RY70_732
Putative integral membrane protein.
  
     0.703
RY70_839
Hypothetical protein.
  
     0.681
RY70_461
ADP-ribose pyrophosphatase.
 
     0.662
holA
DNA polymerase III.
 
     0.651
trxC
Thioredoxin; Belongs to the thioredoxin family.
       0.643
ycfH
Sec-independent protein.
 
   
 0.610
Your Current Organism:
Bifidobacterium bifidum
NCBI taxonomy Id: 1681
Other names: AS 1.2212, ATCC 29521, Actinobacterium bifidum, Actinomyces bifidus, Actinomyces parabifidus, B. bifidum, BCRC 14615, Bacillus bifidus, Bacillus bifidus communis, Bacterium bifidum, Bacteroides bifidus, Bifidibacterium bifidum, CCRC 14615, CCRC:14615, CCUG 18364, CCUG 45217, CIP 56.7, Cohnistreptothrix bifidus, DSM 20456, IFO 14252, KCTC 3202, LMG 11041, LMG 8810, LMG:11041, LMG:8810, Lactobacillus bifidus type II, Lactobacillus parabifidus, NBRC 100015, NBRC 14252, NCFB 2715, NCIMB 702715, NCTC 13001, Nocardia bifida, Tissieria bifida, strain Ti
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