Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RY70_464ErfK/YbiS/YcfS/YnhG family protein. (616 aa)    
Predicted Functional Partners:
RY70_463
Phosphohydrolase.
       0.616
GcvH
Glycine cleavage system H protein.
       0.547
sufD
FeS assembly protein.
 
  
 0.491
MrdA
Penicillin-binding protein.
  
   
 0.470
RY70_462
Putative alpha beta hydrolase.
       0.465
FtsW
Protein involved in cell wall formation and stabilization of the FtsZ ring during cell division.
 
     0.464
MrcA
Penicillin-binding protein.
  
  
 0.433
sufB
ABC-type transport system protein.
  
  
 0.409
sufC
FeS assembly ATPase.
  
  
 0.408
RY70_466
Hypothetical protein.
       0.406
Your Current Organism:
Bifidobacterium bifidum
NCBI taxonomy Id: 1681
Other names: AS 1.2212, ATCC 29521, Actinobacterium bifidum, Actinomyces bifidus, Actinomyces parabifidus, B. bifidum, BCRC 14615, Bacillus bifidus, Bacillus bifidus communis, Bacterium bifidum, Bacteroides bifidus, Bifidibacterium bifidum, CCRC 14615, CCRC:14615, CCUG 18364, CCUG 45217, CIP 56.7, Cohnistreptothrix bifidus, DSM 20456, IFO 14252, KCTC 3202, LMG 11041, LMG 8810, LMG:11041, LMG:8810, Lactobacillus bifidus type II, Lactobacillus parabifidus, NBRC 100015, NBRC 14252, NCFB 2715, NCIMB 702715, NCTC 13001, Nocardia bifida, Tissieria bifida, strain Ti
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