Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GcvH | RY70_905 | RY70_465 | RY70_905 | Glycine cleavage system H protein. | GlmS. | 0.585 |
GcvH | glmS_1 | RY70_465 | RY70_906 | Glycine cleavage system H protein. | Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.508 |
GcvH | gltB | RY70_465 | RY70_964 | Glycine cleavage system H protein. | Ferredoxin-dependent glutamate synthase. | 0.875 |
GcvH | srrA | RY70_465 | RY70_1816 | Glycine cleavage system H protein. | Transcriptional regulatory protein. | 0.644 |
NagC | RY70_905 | RY70_1711 | RY70_905 | ROK family protein. | GlmS. | 0.471 |
NagC | glmM | RY70_1711 | RY70_518 | ROK family protein. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.403 |
NagC-2 | RY70_905 | RY70_651 | RY70_905 | N-acetylglucosamine repressor. | GlmS. | 0.472 |
NagC-2 | glmM | RY70_651 | RY70_518 | N-acetylglucosamine repressor. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.467 |
NagC-2 | glmS_1 | RY70_651 | RY70_906 | N-acetylglucosamine repressor. | Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.429 |
RY70_905 | GcvH | RY70_905 | RY70_465 | GlmS. | Glycine cleavage system H protein. | 0.585 |
RY70_905 | NagC | RY70_905 | RY70_1711 | GlmS. | ROK family protein. | 0.471 |
RY70_905 | NagC-2 | RY70_905 | RY70_651 | GlmS. | N-acetylglucosamine repressor. | 0.472 |
RY70_905 | RY70_907 | RY70_905 | RY70_907 | GlmS. | Hypothetical protein. | 0.515 |
RY70_905 | asd | RY70_905 | RY70_1906 | GlmS. | Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.640 |
RY70_905 | glmM | RY70_905 | RY70_518 | GlmS. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.789 |
RY70_905 | glmS_1 | RY70_905 | RY70_906 | GlmS. | Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.992 |
RY70_905 | glmU | RY70_905 | RY70_1186 | GlmS. | Bifunctional protein GlmU; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. | 0.835 |
RY70_905 | gltB | RY70_905 | RY70_964 | GlmS. | Ferredoxin-dependent glutamate synthase. | 0.621 |
RY70_905 | srrA | RY70_905 | RY70_1816 | GlmS. | Transcriptional regulatory protein. | 0.530 |
RY70_907 | RY70_905 | RY70_907 | RY70_905 | Hypothetical protein. | GlmS. | 0.515 |
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