Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RY70_1185 | RplO | RY70_1185 | RY70_1686 | Putative Iojap protein. | 50S ribosomal protein L15. | 0.911 |
RY70_1185 | TnsR | RY70_1185 | RY70_939 | Putative Iojap protein. | rRNA methylase. | 0.573 |
RY70_1185 | rplM_2 | RY70_1185 | RY70_1714 | Putative Iojap protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.913 |
RY70_1185 | rplQ | RY70_1185 | RY70_1678 | Putative Iojap protein. | 50S ribosomal protein L17. | 0.914 |
RY70_1185 | rplU | RY70_1185 | RY70_320 | Putative Iojap protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.927 |
RY70_1185 | rplX | RY70_1185 | RY70_1694 | Putative Iojap protein. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.924 |
RY70_941 | RY70_942 | RY70_941 | RY70_942 | Ribosomal RNA small subunit methyltransferase E. | Diadenosine tetraphosphate hydrolase and other HIT family hydrolase. | 0.878 |
RY70_941 | TnsR | RY70_941 | RY70_939 | Ribosomal RNA small subunit methyltransferase E. | rRNA methylase. | 0.640 |
RY70_941 | glgC_1 | RY70_941 | RY70_938 | Ribosomal RNA small subunit methyltransferase E. | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. | 0.517 |
RY70_942 | RY70_941 | RY70_942 | RY70_941 | Diadenosine tetraphosphate hydrolase and other HIT family hydrolase. | Ribosomal RNA small subunit methyltransferase E. | 0.878 |
RY70_942 | TnsR | RY70_942 | RY70_939 | Diadenosine tetraphosphate hydrolase and other HIT family hydrolase. | rRNA methylase. | 0.609 |
RY70_963 | RplO | RY70_963 | RY70_1686 | Translation elongation factor. | 50S ribosomal protein L15. | 0.914 |
RY70_963 | TnsR | RY70_963 | RY70_939 | Translation elongation factor. | rRNA methylase. | 0.573 |
RY70_963 | rplM_2 | RY70_963 | RY70_1714 | Translation elongation factor. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.924 |
RY70_963 | rplQ | RY70_963 | RY70_1678 | Translation elongation factor. | 50S ribosomal protein L17. | 0.901 |
RY70_963 | rplU | RY70_963 | RY70_320 | Translation elongation factor. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.902 |
RY70_963 | rplX | RY70_963 | RY70_1694 | Translation elongation factor. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.910 |
RplO | RY70_1185 | RY70_1686 | RY70_1185 | 50S ribosomal protein L15. | Putative Iojap protein. | 0.911 |
RplO | RY70_963 | RY70_1686 | RY70_963 | 50S ribosomal protein L15. | Translation elongation factor. | 0.914 |
RplO | TnsR | RY70_1686 | RY70_939 | 50S ribosomal protein L15. | rRNA methylase. | 0.577 |
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