STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC57158.1Hypothetical protein. (387 aa)    
Predicted Functional Partners:
SDC57121.1
DNA processing protein.
  
 
 0.834
SDE44534.1
Competence protein ComEC.
  
  
 0.783
SDC95655.1
Oxygen-dependent protoporphyrinogen oxidase.
  
    0.659
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.656
SDC55235.1
ABC-2 type transport system ATP-binding protein.
   
    0.648
SDC57551.1
Prephenate dehydrogenase.
   
  
 0.648
SDD41539.1
Prephenate dehydrogenase.
   
  
 0.648
SDC65161.1
TRSP domain C terminus to PRTase_2.
   
    0.643
SDD80404.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
    
  0.616
SDE42584.1
DNA processing protein.
  
 
 0.611
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.