STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC59385.1Short C-terminal domain-containing protein. (116 aa)    
Predicted Functional Partners:
SDC59353.1
Hypothetical protein.
 
     0.934
SDC59325.1
Phospholipase_D-nuclease N-terminal.
 
     0.843
SDC60745.1
Hypothetical protein.
 
     0.799
SDD35252.1
Serine protease AprX.
  
 
 0.792
SDC59967.1
H+/Cl-antiporter ClcA.
 
     0.763
SDC91510.1
Hypothetical protein.
  
     0.753
SDC58198.1
Protein of unknown function.
  
 
 0.745
SDD36435.1
TIGR02680 family protein.
  
 
 0.745
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.745
SDD12908.1
Phospholipase_D-nuclease N-terminal.
 
     0.732
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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