Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplQ | rplR | SAMN05444580_11417 | SAMN05444580_11432 | Large subunit ribosomal protein L17. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplQ | rplT | SAMN05444580_11417 | SAMN05444580_108151 | Large subunit ribosomal protein L17. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| rplQ | rplV | SAMN05444580_11417 | SAMN05444580_11443 | Large subunit ribosomal protein L17. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplQ | rpmB | SAMN05444580_11417 | SAMN05444580_101913 | Large subunit ribosomal protein L17. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.979 |
| rplQ | rpmE2 | SAMN05444580_11417 | SAMN05444580_101915 | Large subunit ribosomal protein L17. | Large subunit ribosomal protein L31. | 0.958 |
| rplQ | rpmF | SAMN05444580_11417 | SAMN05444580_101916 | Large subunit ribosomal protein L17. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.992 |
| rplQ | rpmG | SAMN05444580_11417 | SAMN05444580_101912 | Large subunit ribosomal protein L17. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.985 |
| rplQ | rpsF | SAMN05444580_11417 | SAMN05444580_11940 | Large subunit ribosomal protein L17. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplQ | rpsN | SAMN05444580_11417 | SAMN05444580_101911 | Large subunit ribosomal protein L17. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.981 |
| rplQ | tuf | SAMN05444580_11417 | SAMN05444580_10987 | Large subunit ribosomal protein L17. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.991 |
| rplR | rplQ | SAMN05444580_11432 | SAMN05444580_11417 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L17. | 0.999 |
| rplR | rplT | SAMN05444580_11432 | SAMN05444580_108151 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplR | rplV | SAMN05444580_11432 | SAMN05444580_11443 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| rplR | rpmB | SAMN05444580_11432 | SAMN05444580_101913 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.970 |
| rplR | rpmE2 | SAMN05444580_11432 | SAMN05444580_101915 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L31. | 0.934 |
| rplR | rpmF | SAMN05444580_11432 | SAMN05444580_101916 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
| rplR | rpmG | SAMN05444580_11432 | SAMN05444580_101912 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.984 |
| rplR | rpsF | SAMN05444580_11432 | SAMN05444580_11940 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplR | rpsN | SAMN05444580_11432 | SAMN05444580_101911 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.984 |
| rplR | tuf | SAMN05444580_11432 | SAMN05444580_10987 | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.986 |
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