STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD23199.1Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose). (189 aa)    
Predicted Functional Partners:
SDC62186.1
Helicase/secretion neighborhood CpaE-like protein.
  
     0.546
SDD98287.1
Hypothetical protein.
 
     0.493
SDE63407.1
Glucose-6-phosphate dehydrogenase assembly protein OpcA.
  
     0.487
SDD90679.1
TIGR02569 family protein.
  
     0.470
SDC75125.1
Predicted arabinose efflux permease, MFS family.
  
     0.459
SDE27455.1
Hypothetical protein.
  
     0.454
SDE44633.1
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.448
SDD47560.1
Copper transport outer membrane protein, MctB.
  
     0.424
SDD70155.1
Hypothetical protein.
  
     0.418
SDE12768.1
Protein of unknown function.
  
     0.418
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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