STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD24457.1Uncharacterized conserved protein, DUF849 family. (350 aa)    
Predicted Functional Partners:
SDD24488.1
Taurine dioxygenase.
 
     0.804
SDD24582.1
AraC-type DNA-binding protein.
 
     0.776
SDD23980.1
Predicted arabinose efflux permease, MFS family.
 
    0.751
SDE61694.1
Predicted arabinose efflux permease, MFS family.
 
    0.751
SDD11761.1
Predicted arabinose efflux permease, MFS family.
 
    0.745
SDD24107.1
AraC-type DNA-binding protein.
 
     0.721
SDD73245.1
Predicted arabinose efflux permease, MFS family.
 
    0.719
SDE42476.1
AraC-type DNA-binding protein.
 
     0.709
SDD73285.1
AraC-type DNA-binding protein.
  
     0.684
SDD84047.1
AraC-type DNA-binding protein.
  
     0.676
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.