Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC78260.1 | SDD56454.1 | SAMN05444580_101874 | SAMN05444580_105115 | Hypothetical protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.743 |
SDD56321.1 | SDD56454.1 | SAMN05444580_105110 | SAMN05444580_105115 | Sulfur carrier protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.901 |
SDD56321.1 | SDD77631.1 | SAMN05444580_105110 | SAMN05444580_106224 | Sulfur carrier protein. | Thiaminase (transcriptional activator TenA). | 0.661 |
SDD56321.1 | SDD77659.1 | SAMN05444580_105110 | SAMN05444580_106225 | Sulfur carrier protein. | Thiaminase (transcriptional activator TenA). | 0.661 |
SDD56321.1 | SDD90636.1 | SAMN05444580_105110 | SAMN05444580_107208 | Sulfur carrier protein. | Adenylyltransferase and sulfurtransferase. | 0.992 |
SDD56321.1 | thiC | SAMN05444580_105110 | SAMN05444580_105116 | Sulfur carrier protein. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.870 |
SDD56321.1 | thiE | SAMN05444580_105110 | SAMN05444580_105107 | Sulfur carrier protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.975 |
SDD56321.1 | thiG | SAMN05444580_105110 | SAMN05444580_105111 | Sulfur carrier protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SDD56321.1 | thiL | SAMN05444580_105110 | SAMN05444580_106150 | Sulfur carrier protein. | Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.519 |
SDD56454.1 | SDC78260.1 | SAMN05444580_105115 | SAMN05444580_101874 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Hypothetical protein. | 0.743 |
SDD56454.1 | SDD56321.1 | SAMN05444580_105115 | SAMN05444580_105110 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Sulfur carrier protein. | 0.901 |
SDD56454.1 | SDD77631.1 | SAMN05444580_105115 | SAMN05444580_106224 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiaminase (transcriptional activator TenA). | 0.947 |
SDD56454.1 | SDD77659.1 | SAMN05444580_105115 | SAMN05444580_106225 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiaminase (transcriptional activator TenA). | 0.989 |
SDD56454.1 | SDD90636.1 | SAMN05444580_105115 | SAMN05444580_107208 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Adenylyltransferase and sulfurtransferase. | 0.845 |
SDD56454.1 | pdxS | SAMN05444580_105115 | SAMN05444580_102164 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.726 |
SDD56454.1 | thiC | SAMN05444580_105115 | SAMN05444580_105116 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.998 |
SDD56454.1 | thiE | SAMN05444580_105115 | SAMN05444580_105107 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |
SDD56454.1 | thiG | SAMN05444580_105115 | SAMN05444580_105111 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.956 |
SDD56454.1 | thiL | SAMN05444580_105115 | SAMN05444580_106150 | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.897 |
SDD77631.1 | SDD56321.1 | SAMN05444580_106224 | SAMN05444580_105110 | Thiaminase (transcriptional activator TenA). | Sulfur carrier protein. | 0.661 |
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