Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC92936.1 | SDE05180.1 | SAMN05444580_102110 | SAMN05444580_109108 | Pentachlorophenol monooxygenase. | Methyltransferase domain-containing protein. | 0.481 |
SDC92936.1 | gcvP | SAMN05444580_102110 | SAMN05444580_104346 | Pentachlorophenol monooxygenase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.590 |
SDC92936.1 | glyA | SAMN05444580_102110 | SAMN05444580_11191 | Pentachlorophenol monooxygenase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.425 |
SDD03424.1 | SDE05180.1 | SAMN05444580_102454 | SAMN05444580_109108 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Methyltransferase domain-containing protein. | 0.467 |
SDD03424.1 | glyA | SAMN05444580_102454 | SAMN05444580_11191 | 2-polyprenyl-6-methoxyphenol hydroxylase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.412 |
SDD03452.1 | SDE05180.1 | SAMN05444580_102455 | SAMN05444580_109108 | Polynucleotide kinase-phosphatase. | Methyltransferase domain-containing protein. | 0.750 |
SDD03698.1 | SDE05180.1 | SAMN05444580_102462 | SAMN05444580_109108 | Magnesium chelatase subunit D. | Methyltransferase domain-containing protein. | 0.691 |
SDE05148.1 | SDE05180.1 | SAMN05444580_109107 | SAMN05444580_109108 | Hypothetical protein. | Methyltransferase domain-containing protein. | 0.526 |
SDE05148.1 | SDE05210.1 | SAMN05444580_109107 | SAMN05444580_109109 | Hypothetical protein. | Phospholipase_D-nuclease N-terminal. | 0.484 |
SDE05148.1 | SDE05240.1 | SAMN05444580_109107 | SAMN05444580_109110 | Hypothetical protein. | D-amino-acid oxidase. | 0.570 |
SDE05180.1 | SDC92936.1 | SAMN05444580_109108 | SAMN05444580_102110 | Methyltransferase domain-containing protein. | Pentachlorophenol monooxygenase. | 0.481 |
SDE05180.1 | SDD03424.1 | SAMN05444580_109108 | SAMN05444580_102454 | Methyltransferase domain-containing protein. | 2-polyprenyl-6-methoxyphenol hydroxylase. | 0.467 |
SDE05180.1 | SDD03452.1 | SAMN05444580_109108 | SAMN05444580_102455 | Methyltransferase domain-containing protein. | Polynucleotide kinase-phosphatase. | 0.750 |
SDE05180.1 | SDD03698.1 | SAMN05444580_109108 | SAMN05444580_102462 | Methyltransferase domain-containing protein. | Magnesium chelatase subunit D. | 0.691 |
SDE05180.1 | SDE05148.1 | SAMN05444580_109108 | SAMN05444580_109107 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.526 |
SDE05180.1 | SDE05210.1 | SAMN05444580_109108 | SAMN05444580_109109 | Methyltransferase domain-containing protein. | Phospholipase_D-nuclease N-terminal. | 0.705 |
SDE05180.1 | SDE05240.1 | SAMN05444580_109108 | SAMN05444580_109110 | Methyltransferase domain-containing protein. | D-amino-acid oxidase. | 0.790 |
SDE05180.1 | cysC | SAMN05444580_109108 | SAMN05444580_11858 | Methyltransferase domain-containing protein. | Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.607 |
SDE05180.1 | gcvP | SAMN05444580_109108 | SAMN05444580_104346 | Methyltransferase domain-containing protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.592 |
SDE05180.1 | glyA | SAMN05444580_109108 | SAMN05444580_11191 | Methyltransferase domain-containing protein. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.495 |
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