STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE21542.1Choline dehydrogenase. (530 aa)    
Predicted Functional Partners:
SDE03576.1
Choline dehydrogenase.
  
  
 
0.908
SDE35785.1
WD40 repeat.
    
 0.866
SDE66925.1
Hypothetical protein.
    
 0.866
SDD47821.1
Hypothetical protein.
    
 0.859
SDE22351.1
Hypothetical protein.
    
 0.859
SDE47578.1
Sulfotransferase family protein.
    
 0.859
SDE27780.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
   
 
 0.790
SDE21566.1
Aldehyde dehydrogenase (NAD(P)+).
 
 
  0.738
SDC52820.1
Hypothetical protein.
    
  0.690
SDC69222.1
Hypothetical protein.
    
  0.690
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.