STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE27005.1Phytoene synthase. (322 aa)    
Predicted Functional Partners:
SDE26946.1
Phytoene desaturase.
 
 0.999
SDE26915.1
Geranylgeranyl diphosphate synthase, type I; Belongs to the FPP/GGPP synthase family.
  
 0.995
SDE06228.1
Heptaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.973
SDC57695.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
 0.910
SDD94532.1
Fatty acid hydroxylase superfamily protein.
  
 0.910
SDD23732.1
Polyketide cyclase / dehydrase and lipid transport.
    
 0.909
SDE09324.1
Methyltransferase domain-containing protein.
    
 0.909
SDE44479.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
    
 0.909
SDD72980.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.905
SDE26974.1
Alpha-1,6-mannosyltransferase.
  
  
 0.893
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.