SDE31833.1 protein (Rhodococcus tukisamuensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDE31833.1

ABC-2 type transport system ATP-binding protein. (322 aa)

Predicted Functional Partners:

SDE31893.1

0.983

SDE31861.1

0.980

SDD64928.1

0.861

SDC96118.1

0.860

SDD38732.1

0.860

SDE12189.1

0.859

SDE51297.1

0.821

SDD98055.1

0.810

SDD21268.1

0.789

SDD98382.1

0.789

Your Current Organism:

Rhodococcus tukisamuensis

NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC96118.1	SDD38732.1	SAMN05444580_102220	SAMN05444580_104138	ABC-2 type transport system permease protein.	ABC transporter efflux protein, DrrB family.	0.461
SDC96118.1	SDD98055.1	SAMN05444580_102220	SAMN05444580_108122	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.629
SDC96118.1	SDE12189.1	SAMN05444580_102220	SAMN05444580_110122	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.484
SDC96118.1	SDE31833.1	SAMN05444580_102220	SAMN05444580_11452	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.860
SDC96118.1	SDE31861.1	SAMN05444580_102220	SAMN05444580_11453	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.849
SDC96118.1	SDE31893.1	SAMN05444580_102220	SAMN05444580_11454	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.540
SDC96118.1	SDE51297.1	SAMN05444580_102220	SAMN05444580_11965	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.526
SDD21268.1	SDE31833.1	SAMN05444580_103304	SAMN05444580_11452	Hypothetical protein.	ABC-2 type transport system ATP-binding protein.	0.789
SDD38732.1	SDC96118.1	SAMN05444580_104138	SAMN05444580_102220	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.461
SDD38732.1	SDD64928.1	SAMN05444580_104138	SAMN05444580_105361	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.454
SDD38732.1	SDD98055.1	SAMN05444580_104138	SAMN05444580_108122	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.615
SDD38732.1	SDE12189.1	SAMN05444580_104138	SAMN05444580_110122	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.482
SDD38732.1	SDE31833.1	SAMN05444580_104138	SAMN05444580_11452	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system ATP-binding protein.	0.860
SDD38732.1	SDE31861.1	SAMN05444580_104138	SAMN05444580_11453	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.852
SDD38732.1	SDE31893.1	SAMN05444580_104138	SAMN05444580_11454	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.541
SDD38732.1	SDE51297.1	SAMN05444580_104138	SAMN05444580_11965	ABC transporter efflux protein, DrrB family.	ABC-2 type transport system permease protein.	0.530
SDD64928.1	SDD38732.1	SAMN05444580_105361	SAMN05444580_104138	ABC-2 type transport system permease protein.	ABC transporter efflux protein, DrrB family.	0.454
SDD64928.1	SDD98055.1	SAMN05444580_105361	SAMN05444580_108122	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.623
SDD64928.1	SDE12189.1	SAMN05444580_105361	SAMN05444580_110122	ABC-2 type transport system permease protein.	ABC-2 type transport system permease protein.	0.492
SDD64928.1	SDE31833.1	SAMN05444580_105361	SAMN05444580_11452	ABC-2 type transport system permease protein.	ABC-2 type transport system ATP-binding protein.	0.861