STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE42326.1Hypothetical protein. (38 aa)    
Predicted Functional Partners:
SDE42378.1
Taurine dioxygenase.
       0.624
SDE42413.1
NADPH2:quinone reductase.
    
  0.502
SDD13342.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
   
    0.402
Your Current Organism:
Rhodococcus tukisamuensis
NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.