SDE42918.1 protein (Rhodococcus tukisamuensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDE42918.1

2-polyprenyl-6-methoxyphenol hydroxylase. (459 aa)

Predicted Functional Partners:

SDD77233.1

0.789

SDE42960.1

0.773

SDD77195.1

0.724

SDE32573.1

0.685

SDC53847.1

0.537

SDD62324.1

0.536

SDE15001.1

0.536

SDE33822.1

0.536

SDE42989.1

0.527

SDD54691.1

0.492

Your Current Organism:

Rhodococcus tukisamuensis

NCBI taxonomy Id: 168276
Other names: JCM 11308, NBRC 100609, NCIMB 13903, R. tukisamuensis, Rhodococcus tukisamuensis Matsuyama et al. 2003, strain Mb8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC53847.1	SDD54691.1	SAMN05444580_101148	SAMN05444580_10562	Polyketide synthase 13.	Condensation domain-containing protein.	0.999
SDC53847.1	SDD62324.1	SAMN05444580_101148	SAMN05444580_105290	Polyketide synthase 13.	Amino acid adenylation domain-containing protein.	0.999
SDC53847.1	SDD77195.1	SAMN05444580_101148	SAMN05444580_106210	Polyketide synthase 13.	Electron transfer flavoprotein alpha subunit apoprotein.	0.469
SDC53847.1	SDD77233.1	SAMN05444580_101148	SAMN05444580_106211	Polyketide synthase 13.	Electron transfer flavoprotein beta subunit.	0.410
SDC53847.1	SDE15001.1	SAMN05444580_101148	SAMN05444580_1111	Polyketide synthase 13.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SDC53847.1	SDE32573.1	SAMN05444580_101148	SAMN05444580_11475	Polyketide synthase 13.	Amino acid adenylation domain-containing protein.	0.999
SDC53847.1	SDE33822.1	SAMN05444580_101148	SAMN05444580_1151	Polyketide synthase 13.	Amino acid adenylation domain-containing protein.	0.999
SDC53847.1	SDE42918.1	SAMN05444580_101148	SAMN05444580_11720	Polyketide synthase 13.	2-polyprenyl-6-methoxyphenol hydroxylase.	0.537
SDD54691.1	SDC53847.1	SAMN05444580_10562	SAMN05444580_101148	Condensation domain-containing protein.	Polyketide synthase 13.	0.999
SDD54691.1	SDD62324.1	SAMN05444580_10562	SAMN05444580_105290	Condensation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDD54691.1	SDD77195.1	SAMN05444580_10562	SAMN05444580_106210	Condensation domain-containing protein.	Electron transfer flavoprotein alpha subunit apoprotein.	0.444
SDD54691.1	SDE15001.1	SAMN05444580_10562	SAMN05444580_1111	Condensation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SDD54691.1	SDE32573.1	SAMN05444580_10562	SAMN05444580_11475	Condensation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDD54691.1	SDE33822.1	SAMN05444580_10562	SAMN05444580_1151	Condensation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDD54691.1	SDE42918.1	SAMN05444580_10562	SAMN05444580_11720	Condensation domain-containing protein.	2-polyprenyl-6-methoxyphenol hydroxylase.	0.492
SDD54691.1	SDE42960.1	SAMN05444580_10562	SAMN05444580_11721	Condensation domain-containing protein.	Pimeloyl-ACP methyl ester carboxylesterase.	0.636
SDD62324.1	SDC53847.1	SAMN05444580_105290	SAMN05444580_101148	Amino acid adenylation domain-containing protein.	Polyketide synthase 13.	0.999
SDD62324.1	SDD54691.1	SAMN05444580_105290	SAMN05444580_10562	Amino acid adenylation domain-containing protein.	Condensation domain-containing protein.	0.999
SDD62324.1	SDD77195.1	SAMN05444580_105290	SAMN05444580_106210	Amino acid adenylation domain-containing protein.	Electron transfer flavoprotein alpha subunit apoprotein.	0.439
SDD62324.1	SDE15001.1	SAMN05444580_105290	SAMN05444580_1111	Amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.997