Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMK57779.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)    
Predicted Functional Partners:
Bang102_004435
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.866
AMK57291.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.774
AMK57290.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.771
AMK57412.1
Class II glutamine amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
AMK57726.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
AMK57590.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
AMK57927.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
AMK57049.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
AMK57361.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.742
AMK58470.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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