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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK57798.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)    
Predicted Functional Partners:
AMK57797.1
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.870
AMK57795.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.772
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.715
AMK58173.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.701
AMK58571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.693
AMK57965.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.691
AMK57358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
AMK57136.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
AMK57635.1
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
AMK57355.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.636
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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