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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK57857.1Type II secretion system protein GspE; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)    
Predicted Functional Partners:
AMK57861.1
Type II secretion system F domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.988
AMK57860.1
N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.910
ftsA
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.904
AMK57863.1
Peptidase A24A domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.903
AMK57866.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.827
AMK57858.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.804
AMK57859.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.758
AMK57856.1
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.748
AMK58089.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.580
AMK58245.1
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.543
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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