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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK58041.1AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)    
Predicted Functional Partners:
AMK57518.1
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.904
AMK58059.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.816
AMK58145.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.815
AMK57573.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.811
AMK58040.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.516
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.475
uvrA
ABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.465
AMK58045.1
RNase adaptor protein RapZ; Displays ATPase and GTPase activities.
 
     0.451
AMK58547.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
AMK57709.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.429
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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