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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK58145.1AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)    
Predicted Functional Partners:
AMK57518.1
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.904
def-3
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.843
AMK58059.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.822
AMK58041.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.815
AMK57573.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.808
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.532
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
       0.499
AMK58146.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.491
rpsB
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family.
   
   0.489
AMK57709.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.429
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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