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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK58191.1General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.859
AMK58553.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
AMK58462.1
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.514
AMK58192.1
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
AMK58546.1
Aminotransferase; Broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.424
AMK57063.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
AMK57221.1
Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
AMK57497.1
Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
AMK57605.1
Succinyldiaminopimelate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
AMK57700.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
Your Current Organism:
Bifidobacterium angulatum
NCBI taxonomy Id: 1683
Other names: AS 1.2265, ATCC 27535, B. angulatum, BCRC 14665, CCRC 14665, CCRC:14665, CCUG 24039, CCUG 24605, CIP 104167, DSM 20098, JCM 7096, LMG 10503, LMG 11039, LMG:10503, LMG:11039, NCFB 2236, NCIMB 702236
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