STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF17156.1HipA-like C-terminal domain-containing protein. (414 aa)    
Predicted Functional Partners:
SDF24110.1
Helix-turn-helix.
   
 
 0.756
SDF81239.1
Putative transcriptional regulator.
   
 
 0.756
SDG09764.1
Helix-turn-helix domain-containing protein.
   
 
 0.756
SDG94378.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.756
SDH33300.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.756
SDH40835.1
Helix-turn-helix.
  
   0.665
SDF31828.1
Protein of unknown function.
  
   0.577
SDG32347.1
Acetyl xylan esterase (AXE1).
  
     0.507
SDH13815.1
Transcriptional regulator, contains XRE-family HTH domain.
  
   0.502
SDF40070.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
   0.437
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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