STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF32694.1DNA-binding transcriptional regulator, FadR family. (269 aa)    
Predicted Functional Partners:
SDF92196.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.756
SDG69880.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.731
SDF32653.1
Hypothetical protein.
       0.689
SDG01797.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.675
SDG73228.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.646
SDF32731.1
Gnt-I system low-affinity gluconate transporter.
 
   
 0.602
SDF32609.1
Methyltransferase domain-containing protein.
       0.543
SDF77286.1
PD-(D/E)XK nuclease family transposase.
  
  
 0.525
SDG69948.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.471
accD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.448
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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