STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF35376.1Beta-galactosidase GanA. (532 aa)    
Predicted Functional Partners:
SDF35417.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
  0.855
SDF35315.1
F5/8 type C domain-containing protein.
 
     0.760
SDF35455.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
   
  0.723
SDG92344.1
Glycosyl hydrolase family 115.
  
     0.720
SDF68492.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.680
SDF69897.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
  
     0.676
SDG92553.1
alpha-N-arabinofuranosidase.
  
     0.645
SDG75367.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.586
SDH16954.1
Beta-xylosidase.
  
     0.585
SDF64826.1
Tannase and feruloyl esterase.
  
     0.572
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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