STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF39806.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (217 aa)    
Predicted Functional Partners:
SDF77286.1
PD-(D/E)XK nuclease family transposase.
  
 0.991
SDF39768.1
Signal transduction histidine kinase.
  0.963
SDF76273.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 
  0.920
SDF66450.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
  0.873
SDG03280.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.864
SDF57956.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.842
SDG84997.1
Two-component system, OmpR family, sensor histidine kinase VanS.
 
  0.840
SDG46863.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
  0.831
SDF22432.1
Signal transduction histidine kinase.
 
  0.830
SDG07228.1
Signal transduction histidine kinase.
  0.828
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.