STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF52742.1N-acetylmuramoyl-L-alanine amidase. (290 aa)    
Predicted Functional Partners:
SDF66943.1
Cell Wall Hydrolase.
  
     0.760
SDH24880.1
Putative sporulation protein YyaC.
  
     0.667
spoVAD
Stage V sporulation protein AD.
  
  
 0.637
SDG90793.1
Hypothetical protein.
  
     0.632
SDG78361.1
Stage V sporulation protein AC.
  
  
 0.628
SDF58534.1
UPF0755 protein.
  
     0.597
spoVT
Transcriptional regulator, AbrB family.
  
     0.584
SDG24659.1
Stage III sporulation protein AD.
  
     0.543
SDF39107.1
Sporulation factor SpoIIGA.
  
   
 0.539
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.517
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.