STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF55228.1Nucleotidyltransferase domain-containing protein. (113 aa)    
Predicted Functional Partners:
SDF55176.1
HEPN domain-containing protein.
 
     0.948
SDG24207.1
Uncharacterized protein, contains HEPN domain, UPF0332 family.
 
     0.786
SDG72743.1
Hypothetical protein.
  
     0.491
eno-2
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
  0.476
SDF55118.1
Transcriptional regulator, TetR family.
 
     0.468
SDF31828.1
Protein of unknown function.
  
     0.458
SDF56214.1
Conserved hypothetical protein (putative transposase or invertase).
  
     0.424
SDH15845.1
Conserved hypothetical protein (putative transposase or invertase).
  
     0.422
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.