STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF64460.1DNA-binding transcriptional regulator, XRE-family HTH domain. (110 aa)    
Predicted Functional Partners:
SDF64499.1
Protein of unknown function.
 
    0.888
SDG10165.1
Predicted ABC-type ATPase.
 
 
 
 0.646
SDF64547.1
Hypothetical protein.
       0.504
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.480
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.442
SDF64419.1
Alpha-galactosidase.
       0.435
SDG10509.1
HipA-like C-terminal domain-containing protein.
   
   0.409
SDF64375.1
AraC-type DNA-binding protein.
       0.405
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.