STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF70539.1Putative ABC transport system ATP-binding protein. (227 aa)    
Predicted Functional Partners:
SDG44113.1
Putative ABC transport system permease protein.
 
 0.978
SDF70572.1
Putative ABC transport system permease protein.
 
   0.969
SDH31868.1
FtsX-like permease family protein.
  0.961
SDH10163.1
FtsX-like permease family protein.
  0.960
SDG17996.1
Putative ABC transport system permease protein.
  0.958
SDF33945.1
Putative ABC transport system permease protein.
  0.956
SDG56138.1
Putative ABC transport system permease protein.
  0.956
SDF20956.1
ABC-2 type transport system ATP-binding protein.
 
    
0.899
SDG46075.1
ABC-2 type transport system ATP-binding protein.
 
     
0.899
SDG40186.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.897
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.