STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF76669.1AraC-type DNA-binding protein. (303 aa)    
Predicted Functional Partners:
SDF82927.1
AraC-type DNA-binding protein.
 
  
  0.829
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.821
SDG33386.1
AraC-type DNA-binding protein.
 
   0.811
SDF99929.1
AraC-type DNA-binding protein.
  
   0.795
SDF97481.1
AraC-type DNA-binding protein.
  
   0.786
SDH11446.1
AraC-type DNA-binding protein.
  
   0.782
SDG01951.1
AraC-type DNA-binding protein.
  
   0.781
SDF89970.1
AraC-type DNA-binding protein.
 
0.721
SDG61657.1
Transcriptional regulator, AraC family.
 
0.716
SDG69722.1
AraC-type DNA-binding protein.
  
   0.696
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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