STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF77286.1PD-(D/E)XK nuclease family transposase. (391 aa)    
Predicted Functional Partners:
SDG45996.1
Two component transcriptional regulator, LuxR family.
  
 0.998
SDG84929.1
DNA binding domain-containing protein, excisionase family.
  
 0.998
SDG74943.1
Signal transduction histidine kinase.
 
 0.997
SDF12378.1
Histidine kinase.
  
 0.996
SDF16899.1
Signal transduction histidine kinase.
  
 0.996
SDF23822.1
Signal transduction histidine kinase.
  
 0.996
SDF31969.1
Signal transduction histidine kinase.
  
 0.996
SDF32295.1
Signal transduction histidine kinase.
  
 0.996
SDF39768.1
Signal transduction histidine kinase.
  
 0.996
SDF57956.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.996
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.