STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF86805.1Plasmid recombination enzyme. (389 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.885
SDF86874.1
Hypothetical protein.
 
     0.851
SDF86773.1
Transposon-encoded protein TnpV.
 
    0.824
SDG77620.1
Chorismate mutase / prephenate dehydratase.
    
  0.768
SDF86840.1
AAA domain-containing protein.
 
     0.760
SDF89445.1
Helix-turn-helix domain-containing protein.
  
    0.757
SDF89414.1
Hypothetical protein.
  
     0.709
SDF89378.1
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.676
SDG82231.1
Helix-turn-helix.
  
    0.676
SDG82147.1
Hypothetical protein.
  
     0.665
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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