STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF96871.1alpha-N-arabinofuranosidase. (501 aa)    
Predicted Functional Partners:
SDF96839.1
alpha-N-arabinofuranosidase.
 
  
 
0.911
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.827
uxaC
Glucuronate isomerase.
     
 0.787
abfA
alpha-N-arabinofuranosidase.
  
  
 
0.778
SDG49652.1
Hypothetical protein.
 
     0.715
araP
Arabinosaccharide transport system permease protein.
  
    0.675
SDF96896.1
Arabinosaccharide transport system permease protein.
  
    0.669
SDG75671.1
alpha-N-arabinofuranosidase.
 
  
 
0.664
araN
Arabinosaccharide transport system substrate-binding protein.
 
    0.620
SDG55586.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.608
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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