STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG00328.1Transcriptional regulator, TetR family. (191 aa)    
Predicted Functional Partners:
SDG00362.1
Hypothetical protein.
 
     0.637
SDF36067.1
Transcriptional regulator, TetR family.
  
     0.613
SDG00399.1
X-X-X-Leu-X-X-Gly heptad repeat-containing protein.
 
    0.608
SDF36533.1
Oleate hydratase.
 
     0.604
SDF41732.1
Rad3-related DNA helicase.
  
     0.490
SDF65621.1
Transcriptional regulator, TetR family.
  
     0.439
SDF40262.1
Transcriptional regulator, TetR family.
  
     0.428
SDF77286.1
PD-(D/E)XK nuclease family transposase.
    
 
 0.410
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.