STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG10732.1Helix-turn-helix domain-containing protein. (239 aa)    
Predicted Functional Partners:
SDF77286.1
PD-(D/E)XK nuclease family transposase.
   
 0.941
SDG10700.1
Two-component system, sensor histidine kinase YesM.
 
  0.934
SDG10673.1
Raffinose/stachyose/melibiose transport system permease protein.
 
     0.766
SDG10590.1
Raffinose/stachyose/melibiose transport system substrate-binding protein.
 
     0.746
SDG10626.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-).
 
     0.732
SDG10767.1
AraC-type DNA-binding protein.
 
    
0.668
SDG40999.1
Two-component system, sensor histidine kinase YesM.
  
  0.658
SDH17132.1
Two-component system, sensor histidine kinase YesM.
 
 
  0.658
SDG89023.1
Two-component system, sensor histidine kinase YesM.
 
 
  0.563
SDH20980.1
Histidine kinase.
 
 
  0.563
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.