STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG45125.1Glycosyl hydrolase family 85. (482 aa)    
Predicted Functional Partners:
SDG45165.1
PKD domain-containing protein.
     0.987
SDG45227.1
Alpha-mannosidase.
 
  
 0.796
SDG45197.1
Hypothetical protein.
 
     0.787
SDF55567.1
Alpha-mannosidase.
 
  
 0.668
SDF55658.1
Putative aldouronate transport system permease protein.
  
     0.662
SDF55703.1
Putative aldouronate transport system permease protein.
  
     0.662
SDF55619.1
Putative aldouronate transport system substrate-binding protein.
 
     0.634
SDF42244.1
Predicted arabinose efflux permease, MFS family.
  
     0.554
SDG75489.1
Putative aldouronate transport system permease protein.
  
     0.521
SDG45094.1
Methyltransferase domain-containing protein.
       0.456
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.