STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG47672.1Saccharopine dehydrogenase, NADP-dependent. (454 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.901
SDG47541.1
Spermidine/putrescine transport system permease protein.
       0.791
SDG47630.1
Spermidine/putrescine transport system substrate-binding protein.
       0.791
SDG47587.1
Spermidine/putrescine transport system permease protein.
       0.790
hydE
Biotin synthase.
   
 
  0.779
potA
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.752
SDF40365.1
Condensation domain-containing protein.
  
 
 0.721
SDG47346.1
Arginine/lysine/ornithine decarboxylase.
    
  0.636
SDF09396.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
 
 0.485
SDG34834.1
Acetaldehyde dehydrogenase.
  
 
 0.485
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.