STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG51438.1Probable DNA metabolism protein. (268 aa)    
Predicted Functional Partners:
SDG51405.1
Putative DNA modification/repair radical SAM protein.
 
  
 0.935
SDF80184.1
Single-strand binding protein family protein.
  
 
   0.618
yeaZ
tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
    0.578
SDG83462.1
Hypothetical protein.
    
   0.570
SDH24208.1
Single-strand DNA-binding protein.
    
   0.570
SDG91025.1
Oxaloacetate decarboxylase, alpha subunit.
   
    0.551
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.492
SDG51480.1
Hypothetical protein.
       0.486
SDF58084.1
Transporter family-2 protein.
  
     0.412
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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