STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG55923.1AAA domain-containing protein. (528 aa)    
Predicted Functional Partners:
SDG55952.1
DNA repair exonuclease SbcCD nuclease subunit.
 
 0.978
SDG55992.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.773
SDH25005.1
Colicin V production protein.
  
     0.605
SDG35558.1
Type II secretion system protein F (GspF).
  
     0.559
SDG54774.1
Hypothetical protein.
  
     0.544
SDG50595.1
Cell division protein FtsL.
  
     0.509
mscL
Large conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.503
SDG79479.1
Hypothetical protein.
  
     0.497
SDG35438.1
Hypothetical protein.
  
     0.445
SDF23625.1
Protein of unknown function.
  
     0.407
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.