STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG75367.1Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (535 aa)    
Predicted Functional Partners:
SDG75330.1
Hypothetical protein.
       0.773
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.766
uxaC
Glucuronate isomerase.
    
 0.754
SDG92344.1
Glycosyl hydrolase family 115.
 
  
  0.677
SDF35376.1
Beta-galactosidase GanA.
  
     0.586
SDG59487.1
Arabinogalactan endo-1,4-beta-galactosidase.
  
  
 0.542
SDG75741.1
Xylan 1,4-beta-xylosidase.
    
 0.532
SDG75407.1
Extracellular solute-binding protein.
       0.531
SDH11409.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.531
SDG75671.1
alpha-N-arabinofuranosidase.
 
  
 0.490
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.