STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH08024.1Site-specific DNA recombinase. (710 aa)    
Predicted Functional Partners:
SDH07983.1
Recombinase.
 
    
0.824
SDG99410.1
DNA modification methylase.
 
   
 0.792
SDH07899.1
Site-specific DNA-methyltransferase (adenine-specific).
 
   
 0.792
SDH00566.1
Site-specific DNA recombinase.
  
     0.770
SDH31401.1
Hypothetical protein.
 
     0.761
SDG72799.1
Site-specific DNA recombinase.
  
     0.690
SDG64048.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
  
     0.662
SDH32811.1
Hypothetical protein.
  
     0.602
SDF88449.1
Protein of unknown function.
  
     0.551
SDG98655.1
Phage tail tape measure protein, TP901 family, core region.
  
     0.486
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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