STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH19477.1lysine-N-methylase. (373 aa)    
Predicted Functional Partners:
SDH19428.1
Predicted metal-binding protein.
       0.746
SDF36908.1
Hypothetical protein.
  
     0.628
SDH24915.1
LysM domain-containing protein.
  
     0.602
SDG91152.1
Sodium pump decarboxylases, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.588
SDF36866.1
Hypothetical protein.
  
     0.536
SDH19517.1
Hypothetical protein.
       0.505
SDH19554.1
Molecular chaperone DnaJ.
       0.505
SDH19346.1
Asparagine synthase (glutamine-hydrolysing).
       0.502
SDH19390.1
Hypothetical protein.
       0.502
SDG66275.1
YcxB-like protein.
  
     0.451
Your Current Organism:
Marvinbryantia formatexigens
NCBI taxonomy Id: 168384
Other names: Bryantella formatexigens, Bryantella formatexigens Wolin et al. 2004, CCUG 46960, DSM 14469, M. formatexigens, Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008, strain I-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.